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Design and implement scalable genome annotation workflows tailored for large-scale biodiversity projects; Develop robust, reproducible pipelines using workflow managers such as Nextflow; Modernise and re-engineer legacy tools into modular, maintainable
You will be expected to lead the development of scalable and creative computational solutions for sequencing data analysis. Specifically, your project will involve developing computational methods for analysing a unique collection of hundreds of long-read
Your role in this project will be to explore soil microbial diversity and functions and ecosystem services across European land-use types and biomes. Your will analyse microbial biodiversity and functions datasets, preparing manuscripts, and publishing
Isolate bacteria specifically from hydathodes using laser-microdissection and establish a strain collection from cabbage-associated bacteria; Apply 16S rRNA amplicon sequencing and fluorescence in situ hybridization (FISH) staining of leaf thin-sections
The project involves advanced techniques such as ex vivo calcium imaging of mouse and human urothelium, X-ray videocystometry in awake mice, and optogenetic modulation of urothelial cells. The candidate will design and conduct experiments exploring